{
  "case_version": "0.1.0",
  "generated_on": "2026-08-30",
  "deseq2_version": "1.52.0",
  "source": "airway 1.32.0; GSE52778; Himes et al. 2014",
  "source_url": "https://bioconductor.org/packages/airway/",
  "license": "LGPL (as declared by the airway package)",
  "design": "~ cell + dex",
  "numerator": "trt",
  "denominator": "untrt",
  "test": "two-sided Wald, unshrunken MLE",
  "genes_before_filter": 63677,
  "genes_fitted": 16139,
  "alpha": 0.05,
  "prefilter": "At least 10 counts in at least 4 libraries",
  "adjustment": "BH, with independent filtering at alpha 0.05; full eligible family, not these three genes",
  "samples": [
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      "sample_id": "SRR1039508",
      "cell": "N61311",
      "dex": "untrt"
    },
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      "sample_id": "SRR1039509",
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      "sample_id": "SRR1039512",
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    },
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      "sample_id": "SRR1039513",
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      "sample_id": "SRR1039516",
      "cell": "N080611",
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      "sample_id": "SRR1039517",
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      "sample_id": "SRR1039520",
      "cell": "N061011",
      "dex": "untrt"
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      "sample_id": "SRR1039521",
      "cell": "N061011",
      "dex": "trt"
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      "lfcSE": 0.3692506464808173,
      "pvalue": 6.773114473537505e-28,
      "padj": 7.443840948486427e-26,
      "normalized_counts": [
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}